Installation

Snakedeploy can be installed via pixi, conda, pypi or from source.

Install via pixi

For global installation (recommended), run

$ pixi global install snakedeploy

For local installation into an existing pixi workspace, run

$ pixi add snakedeploy

Install via mamba/conda

$ mamba install -c bioconda -c conda-forge snakedeploy

or

$ conda install -c bioconda -c conda-forge snakedeploy

Install via pip

$ pip install snakedeploy

Install from source

$ git clone git@github.com:snakemake/snakedeploy.git
$ cd snakedeploy
$ pip install .

$ pip install -e .

Testing the installation

Once snakedeploy is installed, you should be able to inspect the client with

snakedeploy --help